CTRI Publications

Publications for reporting period 2-1-2012 to 4-2-2015
Public Access compliance, UCSD CTSA award cited

Ai R, Whitaker JW, Boyle DL, Tak PP, Gerlag DM, Wang W, Firestein GS. DNA methylome signature in early rheumatoid arthritis synoviocytes compared with longstanding rheumatoid arthritis synoviocytes. Arthritis Rheumatol. 2015 Mar 25. doi: 10.1002/art.39123. [Epub ahead of print] PMID: 25808728 [PubMed - as supplied by publisher].

Sonnenberg SB, Rane AA, Liu CJ, Rao N, Agmon G, Suarez S, Wang R, Munoz A, Bajaj V, Zhang S, Braden R, Schup-Magoffin PJ, Kwan OL, DeMaria AN, Cochran JR, Christman KL. Delivery of an engineered HGF fragment in an extracellular matrix-derived hydrogel prevents negative LV remodeling post-myocardial infarction. Biomaterials. 2015 Mar;45:56-63. doi: 10.1016/j.biomaterials.2014.12.021. Epub 2015 Jan 13. PubMed PMID: 25662495 [PubMed - in process] PMCID: PMC4326250 [Available on 2016-03-01].

Boland BS, Widjaja CE, Banno A, Zhang B, Kim SH, Stoven S, Peterson MR, Jones MC, Su HI, Crowe SE, Bui JD, Ho SB, Okugawa Y, Goel A, Marietta EV, Khosroheidari M, Jepsen K, Aramburu J, López-Rodríguez C, Sandborn WJ, Murray JA, Harismendy O, Chang JT. Immunodeficiency and autoimmune enterocolopathy linked to NFAT5 haploinsufficiency. J Immunol. 2015 Mar 15;194(6):2551-60. doi: 10.4049/jimmunol.1401463. Epub 2015 Feb 9. PubMed PMID: 25667416 [PubMed - in process] PMCID: PMC4355235 [Available on 2016-03-15].

Boland BS, Boyle DL, Sandborn WJ, Firestein GS, Levesque BG, Hillman J, Zhang B, Proudfoot J, Eckmann L, Ernst PB, Rivera-Nieves J, Pola S, Copur-Dahi N, Zou G, Chang JT. Validation of Gene Expression Biomarker Analysis for Biopsy-based Clinical Trials in Crohn's Disease. Inflamm Bowel Dis. 2015 Feb;21(2):323-30. doi: 10.1097/MIB.0000000000000264. PMID: 25545378 [PubMed - in process]

Madison SJ, Monahan AM, Agarwal RR, Furnish TJ, Mascha EJ, Xu Z, Donohue MC, Morgan AC, Ilfeld BM. A randomized, triple-masked, active-controlled investigation of the relative effects of dose, concentration, and infusion rate for continuous popliteal-sciatic nerve blocks in volunteers. Br J Anaesth. 2015 Jan;114(1):121-9. doi: 10.1093/bja/aeu333. Epub 2014 Sep 23. PubMed PMID: 25248648 [PubMed - indexed for MEDLINE] PMCID: PMC4263082 [Available on 2016-01-01].

Martin AS, Distelberg B, Palmer BW, Jeste DV. Development of a new multidimensional individual and interpersonal resilience measure for older adults. Aging Ment Health. 2015 Jan;19(1):32-45. doi: 10.1080/13607863.2014.909383. Epub 2014 May 1. PMID: 24787701 [PubMed - indexed for MEDLINE]

Nguyen NH, McCormack SA, Vutien P, Yee BE, Devaki P, Jencks D, Nguyen MH. Meta-Analysis: Superior Treatment Response in Asian Patients with Hepatitis C Virus Genotype 6 versus Genotype 1 with Pegylated Interferon and Ribavirin. Intervirology. 2015 Jan 10;58(1):27-34. [Epub ahead of print] PMID: 25592813 [PubMed - as supplied by publisher] PMCID: PMC4351719 [Available on 2016-01-10]

Moore RC, Dev SI, Jeste DV, Dziobek I, Eyler LT. Distinct neural correlates of emotional and cognitive empathy in older adults. Psychiatry Res. 2014 Dec 24. pii: S0925-4927(14)00268-6. doi: 10.1016/j.pscychresns.2014.10.016. [Epub ahead of print] PubMed PMID: 25770039.

Schulten V, Tripple V, Sidney J, Greenbaum J, Frazier A, Alam R, Broide D, Peters B, Sette A. Association between specific timothy grass antigens and changes in TH1- and TH2-cell responses following specific immunotherapy. J Allergy Clin Immunol. 2014 Nov;134(5):1076-83. doi: 10.1016/j.jaci.2014.05.033. Epub 2014 Jul 16. PubMed PMID: 25042980 [PubMed - indexed for MEDLINE] PMCID: PMC4253970 [Available on 2015-11-01].

Beppu LY, Anilkumar AA, Newbury RO, Dohil R, Broide DH, Aceves SS. TGF-β1-induced phospholamban expression alters esophageal smooth muscle cell contraction in patients with eosinophilic esophagitis. J Allergy Clin Immunol. 2014 Nov;134(5):1100-1107.e4. doi: 10.1016/j.jaci.2014.04.004. Epub 2014 May 13. PubMed PMID: 24835503 [PubMed - indexed for MEDLINE] PMCID: PMC4231011 [Available on 2015-11-01].

Rissling AJ, Miyakoshi M, Sugar CA, Braff DL, Makeig S, Light GA. Cortical substrates and functional correlates of auditory deviance processing deficits in schizophrenia. Neuroimage Clin. 2014 Oct 1;6:424-37. doi: 10.1016/j.nicl.2014.09.006. eCollection 2014. PMID: 25379456 [PubMed - in process] Free PMC Article

Zlatar ZZ, Moore RC, Palmer BW, Thompson WK, Jeste DV. Cognitive complaints correlate with depression rather than concurrent objective cognitive impairment in the successful aging evaluation baseline sample. J Geriatr Psychiatry Neurol. 2014 Sep;27(3):181-7. doi: 10.1177/0891988714524628. Epub 2014 Mar 10. PMID: 24614203 [PubMed - indexed for MEDLINE] PMCID: PMC4255945 [Available on 2015-09-01]

Hong S, Dimitrov S, Pruitt C, Shaikh F, Beg N. Benefit of physical fitness against inflammation in obesity: role of beta adrenergic receptors. Brain Behav Immun. 2014 Jul;39:113-20. doi: 10.1016/j.bbi.2013.12.009. Epub 2013 Dec 16. PubMed PMID: 24355098 [PubMed - indexed for MEDLINE] PMCID: PMC4059789 [Available on 2015-07-01].

Smith EN, Jepsen K, Arias AD, Shepard PJ, Chambers CD, Frazer KA. Genetic ancestry of participants in the National Children's Study. Genome Biol. 2014 Feb 3;15(2):R22. doi: 10.1186/gb-2014-15-2-r22. PubMed PMID: 24490717 [PubMed - indexed for MEDLINE] PMCID: PMC4053981.Free PMC Article.

Grimes CL, Tan-Kim J, Nager CW, Dyer KY, Menefee SA, Diwadkar GB, Overholser RH, Xu R, Lukacz ES. Outcome measures to assess anatomy and function of the posterior vaginal compartment. Int Urogynecol J. 2014 Jul;25(7):893-9. doi: 10.1007/s00192-013-2303-8. Epub 2014 Jan 29. PMID: 24474607 [PubMed - indexed for MEDLINE]

Black ML, Curran MC, Golshan S, Daly R, Depp C, Kelly C, Jeste DV. Summer research training for medical students: impact on research self-efficacy. Clin Transl Sci. 2013 Dec;6(6):487-9. PubMed PMID: 24330695; PubMed Central PMCID: PMC3868994.

Makena Hightower C, Zhang K, Miramontes-González JP, Rao F, Wei Z, Schork AJ, Nievergelt CM, Biswas N, Mahata M, Elkelis N, Taupenot L, Stridsberg M, Ziegler MG, O'Connor DT. Genetic variation at the delta-sarcoglycan (SGCD) locus elevates heritable sympathetic nerve activity in human twin pairs. J Neurochem. 2013 Dec;127(6):750-61. PubMed PMID: 23786442; PubMed Central PMCID: PMC3833977.

Simpson DR, Martínez ME, Gupta S, Hattangadi-Gluth J, Mell LK, Heestand G, Fanta P, Ramamoorthy S, Le QT, Murphy JDRacial disparity in consultation, treatment, and the impact on survival in metastatic colorectal cancer. J Natl Cancer Inst. 2013 Dec 4;105(23):1814-20. Epub 2013 Nov 14.PMID: 24231453 [PubMed - indexed for MEDLINE] PMCID: PMC4383284.

Ilfeld BM, Malhotra N, Furnish TJ, Donohue MC, Madison SJ. Liposomal bupivacaine as a single-injection peripheral nerve block: a dose-response study. Anesth Analg. 2013 Nov;117(5):1248-56. PubMed PMID: 24108252; PubMed Central PMCID: PMC3808480.

Toneff T, Funkelstein L, Mosier C, Abagyan A, Ziegler M, Hook V. Beta-amyloid peptides undergo regulated co-secretion with neuropeptide and catecholamine neurotransmitters. Peptides. 2013 Aug;46:126-35. PubMed PMID: 23747840; PubMed Central PMCID: PMC3842158.

Luo J, Zhao L, Chen AY, Zhang X, Zhu J, Zhao J, Ouyang H, Luo H, Song Y, Lee J, Patel SH, Shaw PX, Sadda S, Zhuo Y, Rosenfeld MG, Zhang K. TCF7L2 variation and proliferative diabetic retinopathy. Diabetes. 2013 Jul;62(7):2613-7. PubMed PMID: 23434931; PubMed Central PMCID: PMC3712060.

Zhao L, Grob S, Avery R, Kimura A, Pieramici D, Lee J, Rabena M, Ortiz S, Quach J, Cao G, Luo H, Zhang M, Pei M, Song Y, Tornambe P, Goldbaum M, Ferreyra H, Kozak I, Zhang K. Common variant in VEGFA and response to anti-VEGF therapy for neovascular age-related macular degeneration. Curr Mol Med. 2013 Jul;13(6):929-34. PubMed PMID: 23745581; PubMed Central PMCID: PMC3805052.

McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee- Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. PubMed PMID: 23754396; PubMed Central PMCID: PMC3696752.

St-Jules DE, Watters CA, Brunt EM, Wilkens LR, Novotny R, Belt P, Lavine JE, for the NASH CRN. Estimation of Fish And Omega-3 Fatty Acid Intake In Pediatric Nonalcoholic Fatty Liver Disease. J Pediatr Gastroenterol Nutr. 2013 Jun 30;PubMed PMID: 23820405; PubMed Central PMCID: PMC3864540. [Epub ahead of print]

McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS. Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform. Genome Res. 2013 May;23(5):867-77. PubMed PMID: 23564253; PubMed Central PMCID: PMC3638142.

Stanford SM, Maestre MF, Campbell AM, Bartok B, Kiosses WB, Boyle DL, Arnett HA, Mustelin T, Firestein GS, Bottini N. Protein tyrosine phosphatase expression profile of rheumatoid arthritis fibroblast-like synoviocytes: a novel role of SH2 domain-containing phosphatase 2 as a modulator of invasion and survival. Arthritis Rheum. 2013 May;65(5):1171-80. PubMed PMID: 23335101; PubMed Central PMCID: PMC3636201.

Han J, Liu Y, Rao F, Nievergelt CM, O'Connor DT, Wang X, Liu L, Bu D, Liang Y, Wang F, Zhang L, Zhang H, Chen Y, Wang H. Common genetic variants of the human uromodulin gene regulate transcription and predict plasma uric acid levels. Kidney Int. 2013 Apr;83(4):733- 40. PubMed PMID: 23344472; PubMed Central PMCID: PMC3687544.

Plemmons DK, Kalichman MW. Reported goals of instructors of responsible conduct of research for teaching of skills. J Empir Res Hum Res Ethics. 2013 Apr;8(2):95-103. PubMed PMID: 23651933; PubMed Central PMCID: PMC3705638.

Barrett CL, Schwab RB, Jung H, Crain B, Goff DJ, Jamieson CH, Thistlethwaite PA, Harismendy O, Carson DA, Frazer KA.M Transcriptome sequencing of tumor subpopulations reveals a spectrum of therapeutic options for squamous cell lung cancer. PLoS One. 2013;8(3):e58714. PubMed PMID: 23527012; PubMed Central PMCID: PMC3604164.

Jeste DV, Savla GN, Thompson WK, Vahia IV, Glorioso DK, Martin AS, Palmer BW, Rock D, Golshan S, Kraemer HC, Depp CA. Association between older age and more successful aging: critical role of resilience and depression. Am J Psychiatry. 2013 Feb 1;170(2):188-96. PubMed PMID: 23223917; PubMed Central PMCID: PMC3593664.

Nakano K, Boyle DL, Firestein GS. Regulation of DNA methylation in rheumatoid arthritis synoviocytes. J Immunol. 2013 Feb 1;190(3):1297-303. PubMed PMID: 23277489; PubMed Central PMCID: PMC3552038.

Devereaux M, Kalichman M. ESCRO committees--not dead yet. Am J Bioeth. 2013;13(1):59-60. PubMed PMID: 23311849; PubMed Central PMCID: PMC3594697.

Jin H, Shih PA, Golshan S, Mudaliar S, Henry R, Glorioso DK, Arndt S, Kraemer HC, Jeste DV. Comparison of longer-term safety and effectiveness of 4 atypical antipsychotics in patients over age 40: a trial using equipoise-stratified randomization. J Clin Psychiatry. 2013 Jan;74(1):10-8. PubMed PMID: 23218100; PubMed Central PMCID: PMC3600635.

Harmell AL, Palmer BW, Jeste DV. Preliminary study of a web-based tool for enhancing the informed consent process in schizophrenia research. Schizophr Res. 2012 Nov;141(2-3):247-50. PubMed PMID: 22939457; PubMed Central PMCID: PMC3471544.

Jiang X, Menon A, Wang S, Kim J, Ohno-Machado L. Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): An Algorithm for Joint Optimization of Discrimination and Calibration. PLoS One. 2012;7(11):e48823. PubMed PMID: 23139819; PubMed Central PMCID: PMC3490990.

Zhang K, Rao F, Miramontes-Gonzalez JP, Hightower CM, Vaught B, Chen Y, Greenwood TA, Schork AJ, Wang L, Mahata M, Stridsberg M, Khandrika S, Biswas N, Fung MM, Waalen J, Middelberg RP, Heath AC, Montgomery GW, Martin NG, Whitfield JB, Baker DG, Schork NJ, Nievergelt CM, O'Connor DT. Neuropeptide Y (NPY): genetic variation in the human promoter alters glucocorticoid signaling, yielding increased NPY secretion and stress responses. J Am Coll Cardiol. 2012 Oct 23;60(17):1678-89. PubMed PMID: 23021333; PubMed Central PMCID: PMC3687554.

Vinterbo SA, Sarwate AD, Boxwala AA. Protecting count queries in study design. J Am Med Inform Assoc. 2012 Sep-Oct;19(5):750-7. PubMed PMID: 22511018; PubMed Central PMCID: PMC3422502.

Wu Y, Jiang X, Kim J, Ohno-Machado L. Grid Binary Logistic REgression (GLORE): building shared models without sharing data. J Am Med Inform Assoc. 2012 Sep-Oct;19(5):758-64. PubMed PMID: 22511014; PubMed Central PMCID: PMC3422844.

Dunn W, Sanyal AJ, Brunt EM, Unalp-Arida A, Donohue M, McCullough AJ, Schwimmer JB. Modest alcohol consumption is associated with decreased prevalence of steatohepatitis in patients with non-alcoholic fatty liver disease (NAFLD). J Hepatol. 2012 Aug;57(2):384-91. PubMed PMID: 22521357; PubMed Central PMCID: PMC3399018.

Grob S, Luo J, Hughes G, Lee C, Zhou X, Lee J, Du H, Ferreyra H, Freeman WR, Kozak I, Zhang K. Genetic analysis of simultaneous geographic atrophy and choroidal neovascularization. Eye (Lond). 2012 Aug;26(8):1106-13. PubMed PMID: 22699975; PubMed Central PMCID: PMC3420042.

Yost SE, Smith EN, Schwab RB, Bao L, Jung H, Wang X, Voest E, Pierce JP, Messer K, Parker BA, Harismendy O, Frazer KA. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res. 2012 Aug;40(14):e107. PubMed PMID: 22492626; PubMed Central PMCID: PMC3413110.

Euteneuer F, Mills PJ, Rief W, Ziegler MG, Dimsdale JE. Subjective social status predicts in vivo responsiveness of β-adrenergic receptors. Health Psychol. 2012 Jul;31(4):525-9. PubMed PMID: 22023437; PubMed Central PMCID: PMC3386425.

Liu L, Mills PJ, Rissling M, Fiorentino L, Natarajan L, Dimsdale JE, Sadler GR, Parker BA, Ancoli-Israel S. Fatigue and sleep quality are associated with changes in inflammatory markers in breast cancer patients undergoing chemotherapy. Brain Behav Immun. 2012 Jul;26(5):706-13. PubMed PMID: 22406004; PubMed Central PMCID: PMC3372667.

Karris MY, Anderson CM, Morris SR, Smith DM, Little SJ. Cost savings associated with testing of antibodies, antigens, and nucleic acids for diagnosis of acute HIV infection. J Clin Microbiol. 2012 Jun;50(6):1874-8. PubMed PMID: 22442319; PubMed Central PMCID: PMC3372146.

Jiang X, Boxwala AA, El-Kareh R, Kim J, Ohno-Machado L. A patient driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. J Am Med Inform Assoc. 2012 Jun;19(1e):e137-44. PubMed PMID: 22493049; PubMed Central PMCID: PMC3392846.

Baek JS, Fang L, Li AC, Miller YI. Ezetimibe and simvastatin reduce cholesterol levels in zebrafish larvae fed a high-cholesterol diet. Cholesterol. 2012;2012:564705. PubMed PMID: 22693663; PubMed Central PMCID: PMC3369394.

Aupperle RL, Tankersley D, Ravindran LN, Flagan T, Stein NR, Stein MB, Paulus MP. Pregabalin effects on neural response to emotional faces. Front Hum Neurosci. 2012;6:42. PubMed PMID: 22470326; PubMed Central PMCID: PMC3313548.

Sadja J, Tomfohr L, Jiménez JA, Edwards KM, Rock CL, Calfas K, Mills PJ. Higher physical fatigue predicts adherence to a 12-week exercise intervention in women with elevated blood pressure. Health Psychol. 2012 Mar;31(2):156-63. PubMed PMID: 21988095; PubMed Central PMCID: PMC3295923.

Ziegler MG, Milic M. New therapies for postural hypotension. Hypertension. 2012 Mar;59(3):548-9. PubMed PMID: 22311904; PubMed Central PMCID: PMC3297419.

Carney CE, Buysse DJ, Ancoli-Israel S, Edinger JD, Krystal AD, Lichstein KL, Morin CM. The consensus sleep diary: standardizing prospective sleep self-monitoring. Sleep. 2012 Feb 1;35(2):287-302. PubMed PMID: 22294820; PubMed Central PMCID: PMC3250369.

Grob S, Kozak I, Zhang K. Retinal pigment epithelial tear resembling retinal tear. Eye (Lond). 2012 Feb;26(2):333-4. PubMed PMID: 22079970; PubMed Central PMCID: PMC3272191.

Sandborn WJ. Mucosal healing with infliximab: results from the active ulcerative colitis trials. Gastroenterol Hepatol (N Y). 2012 Feb;8(2):117-9. PubMed PMID: 22485079; PubMed Central PMCID: PMC3317509

Shoucri BM, Edwards KM, Schmid-Schönbein GW, Mills PJ. Plasma-stimulated pseudopod formation is increased in patients with elevated blood pressure. Hypertens Res. 2011 Jun;34(6):787-9. PubMed PMID:21412244; PubMed Central PMCID: PMC3287064.