CTRI Publications

Publications for reporting period 2-1-2012 to 1-31-2014

Public Access compliance, UCSD CTSA award cited

Devereaux M, Kalichman M. ESCRO committees--not dead yet. Am J Bioeth. 2013;13(1):59-60. PubMed PMID: 23311849; PubMed Central PMCID: PMC3594697. http://www.tandfonline.com/doi/abs/10.1080/15265161.2013.747311#.UvF7K0-A2Uk
Stanford SM, Maestre MF, Campbell AM, Bartok B, Kiosses WB, Boyle DL, Arnett HA, Mustelin T, Firestein GS, Bottini N. Protein tyrosine phosphatase expression profile of rheumatoid arthritis fibroblast-like synoviocytes: a novel role of SH2 domain-containing phosphatase 2 as a modulator of invasion and survival. Arthritis Rheum. 2013 May;65(5):1171-80. PubMed PMID: 23335101; PubMed Central PMCID: PMC3636201. http://onlinelibrary.wiley.com/doi/10.1002/art.37872/full
Jeste DV, Savla GN, Thompson WK, Vahia IV, Glorioso DK, Martin AS, Palmer BW, Rock D, Golshan S, Kraemer HC, Depp CA. Association between older age and more successful aging: critical role of resilience and depression. Am J Psychiatry. 2013 Feb 1;170(2):188-96. PubMed PMID: 23223917; PubMed Central PMCID: PMC3593664. http://ajp.psychiatryonline.org/article.aspx?articleID=1478351
Jin H, Shih PA, Golshan S, Mudaliar S, Henry R, Glorioso DK, Arndt S, Kraemer HC, Jeste DV. Comparison of longer-term safety and effectiveness of 4 atypical antipsychotics in patients over age 40: a trial using equipoise-stratified randomization. J Clin Psychiatry. 2013 Jan;74(1):10-8. PubMed PMID: 23218100; PubMed Central PMCID: PMC3600635.
Zhang K, Rao F, Miramontes-Gonzalez JP, Hightower CM, Vaught B, Chen Y, Greenwood TA, Schork AJ, Wang L, Mahata M, Stridsberg M, Khandrika S, Biswas N, Fung MM, Waalen J, Middelberg RP, Heath AC, Montgomery GW, Martin NG, Whitfield JB, Baker DG, Schork NJ, Nievergelt CM, O'Connor DT. Neuropeptide Y (NPY): genetic variation in the human promoter alters glucocorticoid signaling, yielding increased NPY secretion and stress responses. J Am Coll Cardiol. 2012 Oct 23;60(17):1678-89. PubMed PMID: 23021333; PubMed Central PMCID: PMC3687554. http://www.ncbi.nlm.nih.gov/pubmed/23021333
Han J, Liu Y, Rao F, Nievergelt CM, O'Connor DT, Wang X, Liu L, Bu D, Liang Y, Wang F, Zhang L, Zhang H, Chen Y, Wang H. Common genetic variants of the human uromodulin gene regulate transcription and predict plasma uric acid levels. Kidney Int. 2013 Apr;83(4):733- 40. PubMed PMID: 23344472; PubMed Central PMCID: PMC3687544. http://www.ncbi.nlm.nih.gov/pubmed/23344472
Plemmons DK, Kalichman MW. Reported goals of instructors of responsible conduct of research for teaching of skills. J Empir Res Hum Res Ethics. 2013 Apr;8(2):95-103. PubMed PMID: 23651933; PubMed Central PMCID: PMC3705638. http://www.ncbi.nlm.nih.gov/pubmed/23651933
Ilfeld BM, Malhotra N, Furnish TJ, Donohue MC, Madison SJ. Liposomal bupivacaine as a single-injection peripheral nerve block: a dose-response study. Anesth Analg. 2013 Nov;117(5):1248-56. PubMed PMID: 24108252; PubMed Central PMCID: PMC3808480. http://www.ncbi.nlm.nih.gov/pubmed/24108252
Makena Hightower C, Zhang K, Miramontes-González JP, Rao F, Wei Z, Schork AJ, Nievergelt CM, Biswas N, Mahata M, Elkelis N, Taupenot L, Stridsberg M, Ziegler MG, O'Connor DT. Genetic variation at the delta-sarcoglycan (SGCD) locus elevates heritable sympathetic nerve activity in human twin pairs. J Neurochem. 2013 Dec;127(6):750-61. PubMed PMID: 23786442; PubMed Central PMCID: PMC3833977. http://www.ncbi.nlm.nih.gov/pubmed/23786442
St-Jules DE, Watters CA, Brunt EM, Wilkens LR, Novotny R, Belt P, Lavine JE, for the NASH CRN. Estimation of Fish And Omega-3 Fatty Acid Intake In Pediatric Nonalcoholic Fatty Liver Disease. J Pediatr Gastroenterol Nutr. 2013 Jun 30;PubMed PMID: 23820405; PubMed Central PMCID: PMC3864540. [Epub ahead of print] http://www.naspghan.org/user-assets/Documents/pdf/CME/JPGN%20CME/November%202013/Estimation_of_Fish_and___3_Fatty_Acid_Intake_in.16.pdf
Nakano K, Boyle DL, Firestein GS. Regulation of DNA methylation in rheumatoid arthritis synoviocytes. J Immunol. 2013 Feb 1;190(3):1297-303. PubMed PMID: 23277489; PubMed Central PMCID: PMC3552038. http://www.jimmunol.org/content/190/3/1297.short
Barrett CL, Schwab RB, Jung H, Crain B, Goff DJ, Jamieson CH, Thistlethwaite PA, Harismendy O, Carson DA, Frazer KA.M Transcriptome sequencing of tumor subpopulations reveals a spectrum of therapeutic options for squamous cell lung cancer. PLoS One. 2013;8(3):e58714. PubMed PMID: 23527012; PubMed Central PMCID: PMC3604164. http://www.ncbi.nlm.nih.gov/pubmed/23527012
McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS. Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform. Genome Res. 2013 May;23(5):867-77. PubMed PMID: 23564253; PubMed Central PMCID: PMC3638142. http://www.ncbi.nlm.nih.gov/pubmed/23564253
Toneff T, Funkelstein L, Mosier C, Abagyan A, Ziegler M, Hook V. Beta-amyloid peptides undergo regulated co-secretion with neuropeptide and catecholamine neurotransmitters. Peptides. 2013 Aug;46:126-35. PubMed PMID: 23747840; PubMed Central PMCID: PMC3842158. http://www.sciencedirect.com/science/article/pii/S0196978113001800
McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee- Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. PubMed PMID: 23754396; PubMed Central PMCID: PMC3696752. http://www.pnas.org/content/early/2013/06/05/1219809110.short
Black ML, Curran MC, Golshan S, Daly R, Depp C, Kelly C, Jeste DV. Summer research training for medical students: impact on research self-efficacy. Clin Transl Sci. 2013 Dec;6(6):487-9. PubMed PMID: 24330695; PubMed Central PMCID: PMC3868994. http://onlinelibrary.wiley.com/doi/10.1111/cts.12062/abstract
Carney CE, Buysse DJ, Ancoli-Israel S, Edinger JD, Krystal AD, Lichstein KL, Morin CM. The consensus sleep diary: standardizing prospective sleep self-monitoring. Sleep. 2012 Feb 1;35(2):287-302. PubMed PMID: 22294820; PubMed Central PMCID: PMC3250369. http://www.ncbi.nlm.nih.gov/pubmed?term=22294820
Luo J, Zhao L, Chen AY, Zhang X, Zhu J, Zhao J, Ouyang H, Luo H, Song Y, Lee J, Patel SH, Shaw PX, Sadda S, Zhuo Y, Rosenfeld MG, Zhang K. TCF7L2 variation and proliferative diabetic retinopathy. Diabetes. 2013 Jul;62(7):2613-7. PubMed PMID: 23434931; PubMed Central PMCID: PMC3712060. http://www.ncbi.nlm.nih.gov/pubmed/23434931
Zhao L, Grob S, Avery R, Kimura A, Pieramici D, Lee J, Rabena M, Ortiz S, Quach J, Cao G, Luo H, Zhang M, Pei M, Song Y, Tornambe P, Goldbaum M, Ferreyra H, Kozak I, Zhang K. Common variant in VEGFA and response to anti-VEGF therapy for neovascular age-related macular degeneration. Curr Mol Med. 2013 Jul;13(6):929-34. PubMed PMID: 23745581; PubMed Central PMCID: PMC3805052. http://www.ncbi.nlm.nih.gov/pubmed/23745581
Aupperle RL, Tankersley D, Ravindran LN, Flagan T, Stein NR, Stein MB, Paulus MP. Pregabalin effects on neural response to emotional faces. Front Hum Neurosci. 2012;6:42. PubMed PMID: 22470326; PubMed Central PMCID: PMC3313548. http://www.ncbi.nlm.nih.gov/pubmed?term=22470326
Baek JS, Fang L, Li AC, Miller YI. Ezetimibe and simvastatin reduce cholesterol levels in zebrafish larvae fed a high-cholesterol diet. Cholesterol. 2012;2012:564705. PubMed PMID: 22693663; PubMed Central PMCID: PMC3369394. http://www.ncbi.nlm.nih.gov/pubmed?term=22693663
Euteneuer F, Mills PJ, Rief W, Ziegler MG, Dimsdale JE. Subjective social status predicts in vivo responsiveness of β-adrenergic receptors. Health Psychol. 2012 Jul;31(4):525-9. PubMed PMID: 22023437; PubMed Central PMCID: PMC3386425. http://www.ncbi.nlm.nih.gov/pubmed?term=22023437
Dunn W, Sanyal AJ, Brunt EM, Unalp-Arida A, Donohue M, McCullough AJ, Schwimmer JB. Modest alcohol consumption is associated with decreased prevalence of steatohepatitis in patients with non-alcoholic fatty liver disease (NAFLD). J Hepatol. 2012 Aug;57(2):384-91. PubMed PMID: 22521357; PubMed Central PMCID: PMC3399018. http://www.ncbi.nlm.nih.gov/pubmed?term=22521357
Harmell AL, Palmer BW, Jeste DV. Preliminary study of a web-based tool for enhancing the informed consent process in schizophrenia research. Schizophr Res. 2012 Nov;141(2-3):247-50. PubMed PMID: 22939457; PubMed Central PMCID: PMC3471544. http://www.ncbi.nlm.nih.gov/pubmed?term=22939457
Liu L, Mills PJ, Rissling M, Fiorentino L, Natarajan L, Dimsdale JE, Sadler GR, Parker BA, Ancoli-Israel S. Fatigue and sleep quality are associated with changes in inflammatory markers in breast cancer patients undergoing chemotherapy. Brain Behav Immun. 2012 Jul;26(5):706-13. PubMed PMID: 22406004; PubMed Central PMCID: PMC3372667. http://www.ncbi.nlm.nih.gov/pubmed?term=22406004
Karris MY, Anderson CM, Morris SR, Smith DM, Little SJ. Cost savings associated with testing of antibodies, antigens, and nucleic acids for diagnosis of acute HIV infection. J Clin Microbiol. 2012 Jun;50(6):1874-8. PubMed PMID: 22442319; PubMed Central PMCID: PMC3372146. http://www.ncbi.nlm.nih.gov/pubmed?term=22442319
Sandborn WJ. Mucosal healing with infliximab: results from the active ulcerative colitis trials. Gastroenterol Hepatol (N Y). 2012 Feb;8(2):117-9. PubMed PMID: 22485079; PubMed Central PMCID: PMC3317509. http://www.ncbi.nlm.nih.gov/pubmed?term=22485079
Yost SE, Smith EN, Schwab RB, Bao L, Jung H, Wang X, Voest E, Pierce JP, Messer K, Parker BA, Harismendy O, Frazer KA. Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens. Nucleic Acids Res. 2012 Aug;40(14):e107. PubMed PMID: 22492626; PubMed Central PMCID: PMC3413110. http://www.ncbi.nlm.nih.gov/pubmed?term=22492626
Wu Y, Jiang X, Kim J, Ohno-Machado L. Grid Binary Logistic REgression (GLORE): building shared models without sharing data. J Am Med Inform Assoc. 2012 Sep-Oct;19(5):758-64. PubMed PMID: 22511014; PubMed Central PMCID: PMC3422844. http://www.ncbi.nlm.nih.gov/pubmed?term=22511014
Vinterbo SA, Sarwate AD, Boxwala AA. Protecting count queries in study design. J Am Med Inform Assoc. 2012 Sep-Oct;19(5):750-7. PubMed PMID: 22511018; PubMed Central PMCID: PMC3422502. http://www.ncbi.nlm.nih.gov/pubmed?term=22511018
Ziegler MG, Milic M. New therapies for postural hypotension. Hypertension. 2012 Mar;59(3):548-9. PubMed PMID: 22311904; PubMed Central PMCID: PMC3297419. http://www.ncbi.nlm.nih.gov/pubmed?term=22311904
Jiang X, Boxwala AA, El-Kareh R, Kim J, Ohno-Machado L. A patient driven adaptive prediction technique to improve personalized risk estimation for clinical decision upport. J Am Med Inform Assoc. 2012 Jun;19(1e):e137-44. PubMed PMID: 22493049; PubMed Central PMCID: PMC3392846. http://www.ncbi.nlm.nih.gov/pubmed?term=22493049
Jiang X, Menon A, Wang S, Kim J, Ohno-Machado L. Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): An Algorithm for Joint Optimization of Discrimination and Calibration. PLoS One. 2012;7(11):e48823. PubMed PMID: 23139819; PubMed Central PMCID: PMC3490990. http://www.ncbi.nlm.nih.gov/pubmed?term=23139819
Grob S, Luo J, Hughes G, Lee C, Zhou X, Lee J, Du H, Ferreyra H, Freeman WR, Kozak I, Zhang K. Genetic analysis of simultaneous geographic atrophy and choroidal neovascularization. Eye (Lond). 2012 Aug;26(8):1106-13. PubMed PMID: 22699975; PubMed Central PMCID: PMC3420042. http://www.ncbi.nlm.nih.gov/pubmed?term=22699975
Grob S, Kozak I, Zhang K. Retinal pigment epithelial tear resembling retinal tear. Eye (Lond). 2012 Feb;26(2):333-4. PubMed PMID: 22079970; PubMed Central PMCID: PMC3272191. http://www.ncbi.nlm.nih.gov/pubmed?term=22079970
Sadja J, Tomfohr L, Jiménez JA, Edwards KM, Rock CL, Calfas K, Mills PJ. Higher physical fatigue predicts adherence to a 12-week exercise intervention in women with elevated blood pressure. Health Psychol. 2012 Mar;31(2):156-63. PubMed PMID: 21988095; PubMed Central PMCID: PMC3295923. http://www.ncbi.nlm.nih.gov/pubmed?term=21988095
Shoucri BM, Edwards KM, Schmid-Schönbein GW, Mills PJ. Plasmastimulated pseudopod formation is increased in patients with elevated blood pressure. Hypertens Res. 2011 Jun;34(6):787-9. PubMed PMID:21412244; PubMed Central PMCID: PMC3287064. http://www.ncbi.nlm.nih.gov/pubmed?term=21412244